Methylsiloxane and fluorinated segments were introduced into the polymer backbone of polyurethane by direct reaction of isocyanate with dialcohol terminated perfluoropolyether (E10-H) and poly(dimethyl siloxane) (PDMS). The polyurethane structure was revealed by Fourier transform infrared spectrometer in ATR mode and Xray photoelectron spectroscope. It was found that the silicon and fluorine moieties easily migrated to the surface of material in film-forming process due to their lower energy, so the water contact angle on membrane surface was greatly enhanced (maximum 100.1°), and the hydrophobic property of material was improved. Different degree of phase separation was observed by scanning electron microscope. Increment of PDMS or E10-H content caused the phase separation obviously, but section of PDMS and E10-H modified polyurethane showed that phase separation reduced. The linear dynamic viscoelastic measurements indicated that the dynamic storage modulus of all samples increased with the increment of frequency, and PDMS modified WPU’s grew fastest. The slope of G′ vs. G″ showed a decrement, so each sample had a shear thinning behavior. The perfluoropolyether oil was to reduce viscosity of the system.