In this article, a systematic study of the design and development of surface-modification schemes for silica coated nanocomposite via an in situ, one-pot way is presented. Silica coated CdSe/ZnS nanoparticles were prepared in a water-in-oil microemulsion and subsequently surface modified via addition of various organosilane reagents to the microemulsion system. The resulting functionalized composite nanoparticles were characterized by different techniques like Transmission Electron Microscopy (TEM), photoluminescence spectroscopy and zeta-potential measurements. The results demonstrate that depending on the sequence of addition of silica precursors and organosilanes the product can show bright luminescence or considerable colloidal stability. The organosilanes molecules which are used here, act both as a stabilizer of the microemulsion system (regarding the charge compensation) and as a functional group the final product on top of silica shell. Using these surface-modification process, silica coated nanoparticles can be more readily conjugated with biomolecules and used as highly luminescent, sensitive, and reproducible labels in bioanalytical applications. Most importantly such surface functionalization could pave the way for controlled multimixed nanoparticles encapsulation (for example magnetic and QD nanoparticles). (C) 2011 Elsevier Inc. All rights reserved.