At the nanoscale and interfaces, the relaxation behavior of polymer melts, which affects the polymer's long-term performance in many important applications, is very different from that in. the bulk. The role of polymer-substrate interfacial interaction, which does not have a bulk counterpart, has not been fully understood to date. In this study, the relaxation of nanometer-thick perfluoropolyether melts on a silicon wafer has been investigated by water contact angle measurement. The polymer-substrate interactions have been systematically changed by tailoring the polymer structure to clarify the effect of the interfacial interaction. The experimental results show that (1) when there is attractive interaction at the interface, some polymers are anchored to the substrate and others are free, (2) the attractive interfacial interaction drives the free polymers to relax at the interface, and (3) the relaxation is much slower than in the bulk, which has been attributed to the low mobility of the anchored polymer chains and the motional cooperativity between anchored and free polymer chains in the nanometer-thick films.