Influence of molecular architecture on phase behavior of graft copolymer melts was studied by using a reciprocal-space self-consistent filed theory (SCFT). The phase diagrams were examined as functions of the architectural parameters describing the graft copolymers (i.e., the number of grafts and the position of first junction). In comparison with the well-known phase diagram of diblock copolymers, the phase diagrams of the graft copolymers are asymmetric. When the number of grafts or the position of first junction varies, the boundaries of order-order transitions have shifts due to the variation in the chain stretching energy. The change in molecular architecture also significantly alters the domain spacing of ordered structures but has weak impact on the density distributions of graft copolymers. For comparison of the theoretical predictions with the existing experimental results, the phase diagrams of graft copolymers were also calculated at strong segregation. The SCFT calculations can accurately capture the characteristics of the phase behavior of graft copolymer melts.