Enzyme and Microbial Technology, Vol.45, No.2, 103-111, 2009
Characterization and PCR optimization of the thermostable family B DNA polymerase from Thermococcus guaymasensis
The gene encoding Thermococcus guaymasensis DNA polymerase (Tgu DNA polymerase) was cloned and sequenced. The 2328 bp Tgu DNA polymerase gene encoded a 775 amino acid residue protein. Alignment of the entire amino acid sequence revealed a high degree of sequence homology between Tgu DNA polymerase and other archaeal family B DNA polymerases. The Tgu DNA polymerase gene was expressed under the control of the T7lac promoter on pET-22b(+) in Escherichia coli BL21-CodonPlus(DE3)-RIL The expressed enzyme was then purified by heat treatment followed by two steps of chromatography. The optimum pH and temperature were 7.5 and 80 degrees C, respectively. The optimal buffer for PCR with Tgu DNA polymerase consisted of 50 mM Tris-HCl (pH 8.2),4 mM MgCl2, 50 mM KCl, and 0.02% Triton X-100. Tgu DNA polymerase revealed 4-fold higher fidelity (3.17 x 10(-6)) than Taq DNA polymerase (12.13 x 10(-6)) and a faster amplification rate than Taq and Pfu DNA polymerases. Tgu DNA polymerase had an extension rate of 30 bases/s and a processivity of 150 nucleotides (nt). Thus, Tgu DNA polymerase has some faster elongation rate and a higher processivity than Pfu DNA polymerase. Use of different ratios of Taq and Tgu DNA polymerases determined that a ratio of 4:1 efficiently facilitated long PCR (approximately 15 kb) and a 3-fold lower error rate (4.44 x 10(-6)) than Taq DNA polymerase. (C) 2009 Elsevier Inc. All rights reserved.
Keywords:DNA polymerase;Thermococcus guaymasensis;Polymerase chain reaction;PCR amplification rate;Fidelity;Archaea