A novel dual-injection poly(methylmethacrylate) (PMMA) microchip electrophoretic system has been designed and fabricated for simultaneous measurements of anions and cations using a single channel and detection device. It consists of two sample reservoirs, on both sides of a common separation channel. Anions and cations can be simultaneously electrokinetically injected into both ends of the separation channel. Due to lower electroosmotic flow in polymer channels compared to glass ones, the cations and anions migrate in opposite directions and can be separated from each other and detected using a movable contactless conductivity detector (MCCD) positioned around the center of the separation channel. The effects of the detector position and of the separation voltage on the response and resolution have been studied and optimized for simultaneous determination of six low-energy explosive-related ions, including ammonium, methyl ammonium, sodium, chloride, nitrate, and perchlorate in a single analytical run (of ca. 3 min). Simultaneous detection of nerve-agent degradation products along with explosive-related anions and cations is also demonstrated. The versatile system can also be used for separately measuring anions or cations. The attractive behavior of the dual-opposite injection microchip offers great promise for a wide range of applications, including "total ion analysis" of various samples.