A two-dimensional model has been developed to simulate particle penetration through porous media. The particle penetration depends on many parameters including the Reynolds number, particle drag coefficient, the ratio of the diameter of injected to filtered particles, fluid velocity, and pore size, etc. The numerical model for separation efficiency in periodic porous media was studied. Previous work has described the effects of injected particle size, Reynolds number and particle drag coefficient. In this study, the porous media flow is modeled (solution of the Navier-Stokes equations) by using the finite element method, and the analysis is restricted to the case of two-dimensional periodic porous media. The effects of these factors and particle depth distribution in porous media are investigated. It is noted that the results for the three Reynolds numbers 1, 16.56, and 100, are qualitatively similar, and about 40% of particles are trapped in the top part of the filter.