The aggregation of polymers is important in the formation of marine aggregates and the vertical transport of material in the ocean. A polymer may be inhomogenous along its length, with associating groups at some points along its length where bonds are more likely to form. In this paper we investigate the effects of inhomogenous 'stickiness' along the polymer length. We describe the results of three-dimensional off-lattice simulations of polymer-polymer aggregation for four different types of polymer: polymers which are sticky along their entire length, polymers which are sticky at the ends only and two types of polymer which are slightly sticky along their entire length. We examine the mean radius of gyration and the fractal dimension of the resulting aggregates and the dynamics of aggregation. The slightly sticky polymers and the polymers which are sticky only at the ends form aggregates with a higher fractal dimension than the polymers which are sticky along their entire length. However. the mean radius of gyration of the aggregates formed by polymers which are sticky only at the ends is significantly larger than that of the aggregates formed from slightly sticky polymers. The aggregation dynamics are also different for the polymers which are sticky only at the ends compared to the slightly sticky polymers. A single 'stickiness value' is therefore likely to be inadequate to describe a polymer. We also examine the effect of polymer rigidity: it seems that the effect of inhomogeneous stickiness is greater for almost-straight polymers than for coiled chains. (c) 2006 Elsevier Inc. All rights reserved.