Strontium hydroxyapatite (SrHAp) nanowires with an aspect ratio of several hundreds were synthesized by controlling the growth conditions during a hydrothermal process. In the strontium phosphate system, it was found that the phase evolution changed with pH and that the aspect ratio of SrHAp was affected by the phases present before heating. Since the conditions for SrHAp nucleation prohibits one-dimensional growth, it was impossible to grow large-scale SrHAp nanowires using routine hydrothermal methods. Through thermodynamic considerations, the mechanisms of nanowire formation appear to involve the rapid release of the stored chemical potential in a metastable phase, which promotes the anisotropic growth of the most stable SrHAp nanostructures. Thereby, the conditions for both the nucleation of the SrHAp phase and the anisotropic growth were determined simultaneously, and considerable quantities of SrHAp nanowires were synthesized.