Journal of the American Chemical Society, Vol.126, No.36, 11231-11237, 2004
T7 RNA polymerase transcription with 5-position modified UTP derivatives
Seven UTP derivatives modified at the 5-position through an amide linkage were tested as substrates for T7 RNA polymerase (T7 RNAP) transcription. All UTP derivatives gave good yields of full-length transcript even from DNA templates that showed a significant number of abortive transcripts using unmodified UTP. A kinetic assay to determine the relative K-m and V-max for T7 RNAP transcription gave surprisingly similar values for UTP and the 5-position hydrophobic modifications phenyl, 4-pyridyl, 2-pyridyl, indolyl, and isobutyl. The 5-position modifications imidazole and amino, which could both be positively charged, gave K-m values significantly higher than UTP. All seven UTP derivatives gave relative V-max values similar to UTP, indicating that insertion of these modified bases into the transcript did not impede its elongation.