We develop the theory for chromatographic separation of isomers such as polycyclic aromatic hydrocarbons, polychlorinated biphenyls, dioxins, steroids, and carotenoids based on shape-selective mechanisms for either exclusion or adsorption. Block-like solute transport and retention on oriented stationary phases are modeled by a dispersed-flow chromatographic equation combined with simultaneous exclusion partitioning and shaped-based adsorption. Molecules to be separated are considered distributed continuously with respect to the shape and sorption parameters. The population balance equations of distribution kinetics provide the governing differential equations that are solved for the temporal moments of the concentration in a chromatographic column. By including dispersive mass transport effects, the model allows estimation of peak variance and HETP and is thus an improvement over theories that focus solely on retention time. The model predictions are compared with experimental data from the literature for gas chromatography. (C) 2004 Elsevier Ltd. All rights reserved.