Journal of the American Chemical Society, Vol.124, No.43, 12684-12688, 2002
Stereochemistry of protected ornithine side chains of gramicidin S derivatives: X-ray crystal structure of the bis-boc-tetra-N-methyl derivative of gramicidin S
An X-ray crystallographic analysis of the bis-N-delta-Boc-tetra-N-alpha-methyl derivative of gramicidin S, cyclo(-Val-MeOrn(Boc)-Leu-D-MePhe-Pro-)(2), was undertaken successfully (R-factor = 0.088). As expected, the main chain adopts an antiparallel pleated beta-sheet conformation, but the pleated sheet is slightly twisted, and the sense of twisting is opposite to that found in the reported crystal structures of the gramicidin S-urea complex and the bis-N-delta-(trichloroacetyl) and bis-N-delta-(m-bromobenzoyl) derivatives of gramicidin S. In agreement with the observed resistance toward N-methylation, the urethane NH groups of the protected Orn side chains are hydrogen bonded to the carbonyl groups of the D-Phe residues. However, the side-chain-main-chain hydrogen bonding is in the i --> i - 3 mode, although hydrogen bonding in the i --> i + 2 mode was deduced from a H-1 NMR study of protected gramicidin S derivatives and was actually found in the crystal structures of the diacylated gramicidin S.