In this work some mixtures of sulphuric and nitric acids have been separated and concentrated by selective electrodialysis (SED) using heterogeneous membranes. Selective membranes can now be used for the separation of acids since anion exchange membranes with reduced transport number to multivalent ions are commercially available. The electric performance of the system has been analyzed and a correlation between current density, hydrodynamic parameters and concentration was established. The modelling of the SED experiments can be achieved with a good fitting for various membrane configurations of industrial interest. Experimental results show that at operation times lower than 40 minutes, the selective anion exchange membranes efficiently exclude the sulphate anions. The nitrate anions fall to aero concentration at 60 minutes of operation and then the sulphate anions begin to cross through the membrane.