Journal of Physical Chemistry B, Vol.124, No.7, 1175-1182, 2020
Impact of A2T and D23N Mutations on Tetrameric A beta 42 Barrel within a Dipalmitoylphosphatidylcholine Lipid Bilayer Membrane by Replica Exchange Molecular Dynamics
In Alzheimer's disease (AD), many experimental and computational studies support the amyloid pore hypothesis of the A beta 42 peptide. We recently designed a beta-barrel tetramer in a membrane-mimicking environment consistent with some low-resolution experimental data. In this earlier study, by using extensive replica exchange molecular dynamics simulations, we found that the wild-type (WT) A beta 42 peptides have a high propensity to form beta-barrels, while the WT A beta 40 peptides do not. In this work, we have investigated the effect of mutations D23N and A2T on the A beta 42 barrel tetramer by using the same enhanced conformational sampling technique. It is known that the D23N mutation leads to early onset AD, while the A2T mutation protects from AD. This computational study in a dipalmitoylphosphatidylcholine (DPPC) lipid bilayer membrane shows that the WT sequence and its A2T variant have similar beta-barrel populations and the three-dimensional model is slightly destabilized for D23N compared to its WT sequence. These extensive modeling calculations indicate that the lower and higher induced toxicity of these two mutations in AD cannot be correlated to their beta-barrel tetramer stabilities in a DPPC lipid bilayer membrane.