Influence of variables has a great impact upon yield of pectin. The present study was organized to harmonize these variables and examine the extracted pectin. In view of this, bio-characterizion and structure analysis of pectin through FTIR was performed. Additionally, a polydispersity and particle size study was also conducted using dynamic light scattering (DLS) of the Manilkarazapota fruit peel. The best extraction variables according to the response optimization predicted model were noted as pH of 5 at 61.11 degrees C for 90 min of heating time, which lead to a 3.7% yield. Bio-characterization revealed that pectin extracted at pH 5 has characteristics similar to HM pectin influence of methoxyl content, degree of esterification, and Galacturonic acid content at 5.11%, 73. 63%, and 77.7%, respectively. The FTIR spectrum depicted a similar surface structure to food-grade pectin. DLS studies revealed that extracted pectin at pH 5 has a particle size in the range of 390.21-421.17 nm and polydispersity (D) of 28.2%-29.3%. These findings indicate that sapodilla is a potential source of pectin for food and pharmaceutical preparation.