Polymeric structures fabricated using Fused Filament Fabrication (FFF) suffer from poor inter-laminar fracture toughness. As a result, these materials exhibit only a fraction of the mechanical performance of those manufactured through more traditional means. Here we show that thermal annealing of confined structures manufactured using the FFF technique dramatically increases their inter-laminar toughness. Single Edge Notch Bend (SENB) fracture specimens made from acrylonitrile-butadienestyrene (ABS) feedstock were isothermally heated in a supporting fixture, post-manufacture, across a range of times and temperatures. Fracture testing was then used to quantify the changes in inter-laminar toughness offered by annealing through measurements of the Mode I critical elastic-plastic strain energy release rateik. Under the most aggressive annealing conditions, the inter-laminar toughness increased by more than 2700% over the non-annealed baseline material. Void migration and aggregation during the annealing process was analyzed using X-ray tomography and provides insight into the toughening mechanisms. Time-scales of reptation and polymer mobility at the interface during annealing are also modeled and agree with fracture experiments. Published by Elsevier Ltd.