gamma-Fe2O3 nanoparticles were synthesized in the valve-assisted micromixer. The resulting nanoparticles were characterized by X-ray diffraction (XRD), transmission electron microscopy (TEM). In the packed bed flow reactor, the investigation concerning the comparison of different heating methods demonstrated that microwave irradiation displayed the best reaction efficiency compared with air heating and oil-bath heating. A novel microflow system under microwave irradiation was designed and employed in the condensation of aldehyde, ethyl acetoacetate and ammonia. Under optimized conditions, Hantzsch reaction conducted well, resulting in a yield of 98.7% and excellent selectivity. In addition, this novel process worked well for other substrates.