Diagnosing faulty conditions of engineering systems is a highly desirable process within control structures, such that control systems may operate effectively and degrading operational states may be mitigated. The goal herein is to enhance lifetime performance and extend system availability. Difficulty arises in developing a mathematical model which can describe all working and failure modes of complex systems. However the experts knowledge of correct and faulty operation is powerful for detecting degradation, and such knowledge can be represented through fuzzy logic. This paper presents a diagnostic system based on fuzzy logic and expert knowledge, attained from experts and experimental findings. The diagnosis is applied specifically to degradation modes in a polymer electrolyte fuel cell. The defined rules produced for the fuzzy logic model connect observed operational modes and symptoms to component degradation. The diagnosis is then tested against common automotive stress conditions to assess functionality. (C) 2017 Published by Elsevier Ltd on behalf of Hydrogen Energy Publications LLC.