Proton currents are an integral part of the most important energy-converting structures in biology. We prepared a new type of bioinspired Nafion (Bio-Nafion) membrane composited of biofunctional SiO2 (Bio-SiO2) nanofiber and Nafion matrix. SiO2 nanofibers were prepared by electrospinning silica sol prepared from tetraethyl orthosilicate. Meanwhile, Bio-SiO2 nanofibers were synthesized by immobilizing amino acids (cysteine, serine, lysine, and glycine) on SiO2 nanofibers, which acted as efficient proton-conducting pathways that involved numerous H+ transport sites. In our study, the SiO2 nano fibers biofunctionalized with cysteine were further oxidized, and the composite membranes were designated as Nafion-Cys, Nafion-Lys, Nafion-Ser, and Nafion-Gly, respectively. We then investigated the different polar groups (-SO3H, -OH, and -NH2) of the amino acids that contributed to membrane properties of thermal stability, water uptake (WU), dimensional stability, proton conductivity, and methanol permeability. Nafion-Cys exhibited the highest proton conductivity of 0.2424 S/cm (80 degrees C). Nafion-Gly showed the lowest proton conductivity and WU because glycine contains the least number of hydrophilic groups among the amino acids. Overall, the introduction of Bio-SiO2 nanofiber to composite membranes significantly improved proton conductivity, dimensional stability, and methanol permeability. (C) 2016 Elsevier B.V. All rights reserved.