Uncertainty quantification (UQ) methods are implemented to obtain a quantitative characterization of the evolution of electrons and ions during the ignition of methane-oxygen mixtures under lean and stoichiometric conditions. The GRI-Mech 3.0 mechanism is combined with an extensive set of ion chemistry pathways and the forward propagation of uncertainty from model parameters to observables is performed using response surfaces. The UQ analysis considers 22 uncertain rate parameters, which include both chemi-ionization, proton transfer, and electron attachment reactions as well as neutral reactions pertaining to the chemistry of the CH radical. The uncertainty ranges for each rate parameter are discussed. Our results indicate that the uncertainty in the time evolution of the electron number density is due mostly to the chemi-ionization reaction CH + O reversible arrow HCO+ + E- and to the main CH consumption reaction CH + O-2 reversible arrow O + HCO. Similar conclusions hold for the hydronium ion H3O+, since electrons and H3O+ account for more than 99% of the total negative and positive charge density, respectively. Surprisingly, the statistics of the number density of charged species show very little sensitivity to the uncertainty in the rate of the recombination reaction H3O+ + E- -> products, until very late in the decay process, when the electron number density has fallen below 20% of its peak value. Finally, uncertainties in the secondary reactions within networks leading to the formation of minor ions (e.g., C2H3O+, HCO+, OH-, and O-) do not play any role in controlling the mean and variance of electrons and H3O+, but do affect the statistics of the minor ions significantly. The observed trends point to the role of key neutral reactions in controlling the mean and variance of the charged species number density in an indirect fashion. Furthermore, total sensitivity indices provide quantitative metrics to focus future efforts aiming at improving the rates of key reactions responsible for the formation of charges during hydrocarbon combustion. (C) 2015 The Combustion Institute. Published by Elsevier Inc. All rights reserved.