Each year there are more frequent blooms of green algae and cyanobacteria, representing a serious environmental problem of eutrophication. Electroflocculation (EF) was studied to harvest the algae which are present in reservoirs, as well as different factors which may influence on the effectiveness of the process: the voltage applied to the culture medium, run times, electrodes separation and natural sedimentation. Finally, the viability of its use to obtain biodiesel was studied by direct transesterification. The EF process carried out at 10 V for 1 min, with an electrode separation of 5.5 cm and a height of 4 cm in culture vessel, obtained a recovery efficiency greater than 95%, and octadecenoic and palmitic acids were obtained as the fatty acid methyl esters (FAMEs). EF is an effective method to harvest green algae during the blooms, obtaining the greatest amount of biomass for subsequent use as a source of biodiesel. (C) 2015 Elsevier Ltd. All rights reserved.