In this work, laser parameters initiating the emergence of periodic structures, so-called ripples on poly (ether ether ketone) (PEEK) surfaces, are investigated. PEEK was used in its semi-crystalline and amorphous forms. Polymer surfaces were treated locally by performing a matrix of laser impacts to highlight the influence of the crystallinity in ultrashort laser interaction. Different surface morphologies or ripples were analyzed by atomic force microscopy and optical interferometry. A map of the presence of these different morphologies according to the laser fluence and the number of pulses was established. Analysis by optical interferometry was carried out and led to the calculations of ablation efficiency. Some significant differences were demonstrated between amorphous and semi-crystalline surfaces. This work revealed topographical information on the local behavior of the irradiated material. Finally, the crystallinity rate of polymer surface seems to be a determinant factor for the periodic nanostructured appearance. (C) 2014 Elsevier B.V. All rights reserved.