A finite element model is developed to investigate the influence of the assembly phase of proton exchange membrane fuel cell (PEMFC) stacks on the mechanical state of the active layer (MEAs). Validated by experimental measurements, this model offers the possibility to analyze the influence of different parameters through the use of a complete parametric set, such as the number of cells and their position in the stack. The simulations show that a better uniformity of the MEA compression is obtained with the greatest number of cells, and at the center of the stack. The finite element analysis (FEA) is finally found to be an effective tool to show the influence of the assembly phase on the performance of PEMFCs, and will help the designer to adapt the future generations of stack to ensure the uniformity of the MEA mechanical strain. Copyright (C) 2014, Hydrogen Energy Publications, LLC. Published by Elsevier Ltd. All rights reserved.