Anode materials are important in the power generation of microbial fuel cell. In this study, polyaniline was used as a conducting polymer anode in two chambers MFC. XPS and SEM were used for the characterization of functional groups of anode materials and the morphology. The power generation of microbial fuel cell was elevated by the modification of anode by nitric acid, ethylenediamine, and diethanolamine. The time that MFC reaches its maximum power generation was shortened by modification. Moreover the SEM photos prove that, it causes better attachment of microorganisms as biocatalysts on electrode surface. The best performance of among the MFCs with different anode electrodes, was the system working by polyaniline modified by ethylenediamine as that generated power of 136.2 mW/m(2) with a 21.3% Coulombic efficiency. Copyright (C) 2012, Hydrogen Energy Publications, LLC. Published by Elsevier Ltd. All rights reserved.