Gold nanochains/nanowires were prepared by simultaneously reducing the gold salt in the presence of stabilizing biomolecules L-aspartate and L-lysine, Collagenthat acts as capping agent and as a template in the formation of two-dimensional gold nanostructures. L-aspartate and L-lysine were used in order to form nanochains due to their ability to cap gold nanoparticles through an oriented attachment mechanism that leads to the formation of one-dimensional nanostructures. The formation of the nanowires was controlled by reducing the gold salt onto the surface of the collagen template. Transmission electron microscopy (TEM) and x-ray powder diffraction were employed in order to demonstrate the morphological and structural properties of the nanowires. In order to provide evidence of the possible applications of gold nanostructures as biocompatible substrates for tissue engineering, mesenchymal stem cells were cultured in their presence. MTT proliferation assays, as well as immunohistochemistry assays, were performed. The experiments demonstrated that each nanostructure stimulates cell proliferation, but better results were obtained in the case of collagen. Moreover, we noticed that the nanostructures are tracked inside of the cells, most likely in the perinuclear region of the stem cells.