The sucrose non-fermenting protein kinase 1 gene (SNF1) regulates the derepression of glucose-repressible genes in microorganisms. In this study, we cloned an ortholog of SNF1 from Penicillium digitatum and characterized its functions through a gene knock-out strategy. Growth of the PdSNF1 mutant (Delta PdSNF1) on the synthetic medium (SM) supplemented with pectin or polygalacturonic acid was severely disturbed. The appearance of disease symptoms on the Delta PdSNF1 mutant-inoculated citrus fruits was significantly delayed as well. The expression levels of the cell wall-degrading enzyme (CWDE) genes (e.g., XY1, PL1, PNL1, and EXPG2) after pectin induction were up-regulated in wild type, but unchanged or less up-regulated in the Delta PdSNF1 mutant. During infection in citrus fruit, the up-regulation of XY1 was delayed in the Delta PdSNF1 mutant. Disruption of PdSNF1 also resulted in impaired conidiation and caused malformation of the conidiophore structures. In addition, the expression of BrlA, a gene that regulates conidiophore development, was significantly impaired in the Delta PdSNF1 mutant. However, the expression of FadA, encoding the alpha-subunit of a heterotrimeric G protein, was up-regulated in this mutant. Collectively, our results demonstrate that the PdSNF1 plays a role in adapting P. digitatum to alternative carbon sources. Its involvements in the virulence of P. digitatum is probably via regulation of the expression of CWDE genes; and it is also involved in conidiation, probably through activation of the conidiation signaling pathway while inactivating the mycelial growth-signaling pathway.