While organic field-effect transistors allow the investigation of interfacial charge transport at the semiconductor-dielectric interface, an electrochemical transistor truly modifies the oxidation level and conductivity throughout the bulk of an organic semiconductor. In this work, the thermoelectric properties of the bulk of the conducting polymer poly(3,4-ethylenedioxythiophene) -poly(styrene sulfonate) were controlled electrically by varying the gate voltage. In light of the growing interest in conducting polymers as thermoelectric generators, this method provides an easy tool to study the physics behind the thermoelectric properties and to optimize polymer thermoelectrics.