Journal of Structural Biology

Journal of Structural Biology, Vol.157, No.1 Entire volume, number list

ISSN: 1047-8477 (Print)

In this Issue (29 articles)

1 - 2	Software tools for macromolecular microscopy Carragher B, Potter CS, Sigworth FJ
3 - 18	Bsoft: Image processing and molecular modeling for electron microscopy Heymann JB, Belnap DM
19 - 27	Cyclops: New modular software suite for cryo-EM Plaisier JR, Jiang L, Abrahams JP
28 - 37	Collaborative EM image processing with the IPLT image processing library and toolbox Philippsen A, Schenk AD, Signorell GA, Mariani V, Berneche S, Engel A
38 - 46	EMAN2: An extensible image processing suite for electron microscopy Tang G, Peng L, Baldwin PR, Mann DS, Jiang W, Rees I, Ludtke SJ
47 - 55	SPARX, a new environment for Cryo-EM image processing Hohn M, Tang G, Goodyear G, Baldwin PR, Huang Z, Penczek PA, Yang C, Glaeser RM, Adams PD, Ludtke SJ
56 - 63	SPIRE: The SPIDER Reconstruction Engine Baxter WT, Leith A, Frank J
64 - 72	2dx - User-friendly image processing for 2D crystals Gipson B, Zeng X, Zhang ZY, Stahlberg H
73 - 82	AUT03DEM - an automated and high throughput program for image reconstruction of icosahedral particles Yan X, Sinkovits RS, Baker TS
83 - 94	The iterative helical real space reconstruction method: Surmounting the problems posed by real polymers Egelman EH
95 - 105	Ruby-Helix: An implementation of helical image processing based on object-oriented scripting language Metlagel Z, Kikkawa YS, Kikkawa M
106 - 116	Application of the iterative helical real-space reconstruction method to large membranous tubular crystals of P-type ATPases Pomfret AJ, Rice WJ, Stokes DL
117 - 125	FREALIGN: High-resolution refinement of single particle structures Grigorieff N
126 - 137	3D reconstruction and processing of volumetric data in cryo-electron tomography Winkler H
138 - 147	UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction Zheng SQ, Keszthelyi B, Branlund E, Lyle JM, Braunfeld MB, Sedat JW, Agard DA
148 - 155	Automated acquisition of electron microscopic random conical tilt sets Zheng SQ, Kollman JM, Braunfeld MB, Sedat JW, Agard DA
156 - 167	A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas Jonic S, Sorzano COS, Cottevieille M, Larquet E, Boisset N
168 - 173	SIGNATURE: A single-particle selection system for molecular electron microscopy Chen JZ, Grigorieff N
174 - 188	Swarm(PS): Rapid, semi-automated single particle selection software Woolford D, Ericksson G, Rothnagel R, Muller D, Landsberg MJ, Pantelic RS, McDowall A, Pailthorpe B, Young PR, Hankamer B, Banks J
189 - 200	Determination of astigmatism in TEM images Fernando KV, Fuller SD
201 - 210	Ab initio resolution measurement for single particle structures Sousa D, Grigorieff N
211 - 225	Ab initio random model method facilitates 3D reconstruction of icosahedral particles Yan XD, Dryden KA, Tang JH, Baker TS
226 - 239	Unsupervised classification of single particles by cluster tracking in multi-dimensional space Fu J, Gao HX, Frank J
240 - 249	The parallelization of SPIDER on distributed-memory computers using MPI Yang C, Penczek PA, Leith A, Asturias FJ, Ng EG, Glaeser RM, Frank J
250 - 261	The Transform Class in SPARX and EMAN2 Baldwin PR, Penczek PA
262 - 270	Displaying 3D data on RNA secondary structures: coloRNA LeBarron J, Mitra K, Frank J
271 - 280	Multi-resolution anchor-point registration of biomolecular assemblies and their components Birmanns S, Wriggers W
281 - 287	Visualizing density maps with UCSF Chimera Goddard TD, Huang CC, Ferrin TE
288 - 295	Implementation and performance evaluation of reconstruction algorithms on graphics processors Diez DC, Mueller H, Frangakis AS