Journal of Physical Chemistry B

Journal of Physical Chemistry B, Vol.125, No.4 Entire volume, number list

ISSN: 1520-6106 (Print)

In this Issue (27 articles)

981 - 994	Molecular Simulations of Hydrophobic Gating of Pentameric Ligand Gated Ion Channels: Insights into Water and Ions Rao SL, Klesse G, Lynch CI, Tucker SJ, Sansom MSP
995 - 1008	Comparative Femtosecond Spectroscopy of Primary Photoreactions of Exiguobacterium sibiricum Rhodopsin and Halobacterium salinarum Bacteriorhodopsin Smitienko OA, Feldman TB, Petrovskaya LE, Nekrasova OV, Yakovleva MA, Shelaev IV, Gostev FE, Cherepanov DA, Kolchugina IB, Dolgikh DA, Nadtochenko VA, Kirpichnikov MP, Ostrovsky MA
1009 - 1019	Role of Ligand Binding Site in Modulating the Mechanical Stability of Proteins with beta-Grasp Fold Gupta M, Venkatramani R, Ainavarapu SRK
1020 - 1035	Molecular Dynamics Simulations Based on Polarizable Models Show that Ion Permeation Interconverts between Different Mechanisms as a Function of Membrane Thickness Chen PR, Vorobyov I, Roux B, Allen TW
1036 - 1048	Molecular Dynamics Study of the Interaction between the N-terminal of alpha-Synuclein and a Lipid Bilayer Mimicking Synaptic Vesicles Kang C, Sun R
1049 - 1060	GPU-Accelerated Flexible Molecular Docking Fan MR, Wang J, Jiang HP, Feng YL, Mahdavi M, Madduri K, Kandemir MT, Dokholyan NV
1061 - 1071	Dichroic Fourier Transform Infrared Spectroscopy Characterization of the beta-Sheet Orientation in Spider Silk Films on Silicon Substrates Hofmaier M, Urban B, Lentz S, Borkner CB, Scheibel T, Fery A, Muller M
1072 - 1084	Investigation of Cooperative Modes for Collective Molecules Using Grid-Based Principal Component Analysis Ogata K
1085 - 1097	Effects of Ions and Small Compounds on the Structure of A beta(42) Monomers Mahmoudinobar F, Nilsson BL, Dias CL
1098 - 1106	RNA Pore Translocation with Static and Periodic Forces: Effect of Secondary and Tertiary Elements on Process Activation and Duration Becchi M, Chiarantoni P, Suma A, Micheletti C
1107 - 1117	Step-Wise Hydration of Magnesium by Four Water Molecules Precedes Phosphate Release in a Myosin Motor Mugnai ML, Thirumalai D
1118 - 1133	Modeling Protein Aggregation Kinetics: The Method of Second Stochasticization Shen JL, Tsai MY, Schafer NP, Wolynes PG
1134 - 1143	An Exciton Dynamics Model of Bryopsis corticulans Light-Harvesting Complex II Nguyen HL, Do TN, Akhtar P, Jansen TLC, Knoester J, Wang WD, Shen JR, Lambrev PH, Tan HS
1144 - 1155	A Fiedler Vector Scoring Approach for Novel RNA Motif Selection Zhu QY, Schlick T
1156 - 1166	Sieving RNA 3D Structures with SHAPE and Evaluating Mechanisms Driving Sequence-Dependent Reactivity Bias Hurst T, Chen SJ
1167 - 1180	Effect of TMAO on the Structure and Phase Transition of Lipid Membranes: Potential Role of TMAO in Stabilizing Cell Membranes under Osmotic Stress Maiti A, Daschakraborty S
1181 - 1195	Dynamics of Human Serum Albumin Corona Formation on Gold Nanorods with Different Surface Ligands In Silico Azman N, Nguyen TX, Kah JCY
1196 - 1206	PEGylation of Dendronized Gold Nanoparticles Affects Their Interaction with Thrombin and siRNA Pedziwiatr-Werbicka E, Gorzkiewicz M, Horodecka K, Lach D, Barrios-Gumiel A, Sanchez-Nieves J, Gomez R, de la Mata FJ, Bryszewska M
1207 - 1213	Substitution Pattern-Controlled Fluorescence Lifetimes of Fluoranthene Dyes Rietsch P, Zeyat M, Hubner O, Hoffmann K, Kutter M, Paskin A, Uhlig J, Lentz D, Resch-Genger U, Eigler S
1214 - 1226	Selective Separation of HNO3 and HCl by Extraction: The Investigation on the Noncovalent Interaction between Extractants and Acids by Density Functional Theory Sun Z, Su L, Yao DD, Yang XB, Song XF
1227 - 1240	Structure, Molecular Interactions, and Dynamics of Aqueous [BMIM][BF4] Mixtures: A Molecular Dynamics Study Chang TM, Billeck SE
1241 - 1247	Nanopore-Mediated Spontaneous Dilution of Droplets: When Evaporation Turns to a Dilutor Gimenez R, Gonzalez F, Soler-Illia GJAA, Berli CLA, Bellino MG
1248 - 1258	MeTFSI (Me = Li, Na) Solvation in Ethylene Carbonate and Fluorinated Ethylene Carbonate: A Molecular Dynamics Study Wrobel P, Kubisiak P, Eilmes A
1259 - 1270	Single Nucleotides Moving through Nanoslits Composed of Self-Assembled Monolayers via Equilibrium and Nonequilibrium Molecular Dynamics Tong XJ, Novak BR, Kavousi S, Moldovan D
1271 - 1281	Thermodynamic Investigation of the Effect of Electric Field on Solid-Liquid Equilibrium Hejazi S, Pahlavanzadeh H, Elliott JAW
1282 - 1292	Iterative Cup Overlapping: An Efficient Identification Algorithm for Cage Structures of Amorphous Phase Hydrates Hao YC, Xu Z, Du S, Yang XF, Ding TJ, Wang BW, Xu JF, Zhang J, Yin HQ
1293 - 1305	Effects of Surfactant Charge and Molecular Structure on Wettability Alteration of Calcite: Insights from Molecular Dynamics Simulations Kubelka J, Bai SX, Piri M