| 1 |
Computational Investigation of RNA A-Bulges Related to the Microtubule-Associated Protein Tau Causing Frontotemporal Dementia and Parkinsonism
Wales DJ, Disney MD, Yildirim I
Journal of Physical Chemistry B, 123(1), 57, 2019 |
| 2 |
Polymersomes with Endosomal pH-Induced Vesicle-to-Micelle Morphology Transition and a Potential Application for Controlled Doxorubicin Delivery
Yildirim T, Traeger A, Sungur P, Hoeppener S, Kellner C, Yildirim I, Pretzel D, Schubert S, Schubert US
Biomacromolecules, 18(10), 3280, 2017 |
| 3 |
Improving Computational Predictions of Single-Stranded RNA Tetramers with Revised alpha/gamma Torsional Parameters for the Amber Force Field
Wales DJ, Yildirim I
Journal of Physical Chemistry B, 121(14), 2989, 2017 |
| 4 |
Structure and Dynamics of Electron Injection and Charge Recombination in i-Motif DNA Conjugates
Fujii T, Thazhathveetil AK, Yildirim I, Young RM, Wasielewski MR, Schatz GC, Lewis FD
Journal of Physical Chemistry B, 121(34), 8058, 2017 |
| 5 |
End-Functionalized Polylactides Using a Calcium-Based Precatalyst: Synthesis and Insights by Mass Spectrometry
Yildirim I, Crotty S, Loh CH, Festag G, Weber C, Caponi PF, Gottschaldt M, Westerhausen M, Schubert US
Journal of Polymer Science Part A: Polymer Chemistry, 54(3), 437, 2016 |
| 6 |
Allosteric transcriptional regulation via changes in the overall topology of the core promoter
Philips SJ, Canalizo-Hernandez M, Yildirim I, Schatz GC, Mondragon A, O'Halloran TV
Science, 349(6250), 877, 2015 |
| 7 |
Optimization of an AMBER Force Field for the Artificial Nucleic Acid, LNA, and Benchmarking with NMR of L(CAAU)
Condon DE, Yildirim I, Kennedy SD, Mort BC, Kierzek R, Turner DH
Journal of Physical Chemistry B, 118(5), 1216, 2014 |
| 8 |
Hydrophobic Organic Linkers in the Self-Assembly of Small Molecule-DNA Hybrid Dimers: A Computational-Experimental Study of the Role of Linkage Direction in Product Distributions and Stabilities
Yildirim I, Eryazici I, Nguyen ST, Schatz GC
Journal of Physical Chemistry B, 118(9), 2366, 2014 |
| 9 |
Interplay of LNA and 2'-0-Methyl RNA in the Structure and Thermodynamics of RNA Hybrid Systems: A Molecular Dynamics Study Using the Revised AMBER Force Field and Comparison with Experimental Results
Yildirim I, Kierzek E, Kierzek R, Schatz GC
Journal of Physical Chemistry B, 118(49), 14177, 2014 |
| 10 |
A Dynamic Structural Model of Expanded RNA CAG Repeats: A Refined X-ray Structure and Computational Investigations Using Molecular Dynamics and Umbrella Sampling Simulations
Yildirim I, Park H, Disney MD, Schatz GC
Journal of the American Chemical Society, 135(9), 3528, 2013 |
