| 1 |
Roles of Active-Site Amino Acid Residues in Specific Recognition of DNA Lesions by Human 8-Oxoguanine-DNA Glycosylase (OGG1)
Tyugashev TE, Vorobjev YN, Kuznetsova AA, Lukina MV, Kuznetsov NA, Fedorova OS
Journal of Physical Chemistry B, 123(23), 4878, 2019 |
| 2 |
Role of Ionizing Amino Acid Residues in the Process of DNA Binding by Human AP Endonuclease 1 and in Its Catalysis
Alekseeva IV, Bakman AS, Vorobjev YN, Fedorova OS, Kuznetsov NA
Journal of Physical Chemistry B, 123(45), 9546, 2019 |
| 3 |
Evaluation of the Gibbs Free Energy Changes and Melting Temperatures of DNA/DNA Duplexes Using Hybridization Enthalpy Calculated by Molecular Dynamics Simulation
Lomzov AA, Vorobjev YN, Pyshnyi DV
Journal of Physical Chemistry B, 119(49), 15221, 2015 |
| 4 |
FAMBE-pH: A fast and accurate method to compute the total solvation free energies of proteins
Vorobjev YN, Vila JA, Scheraga HA
Journal of Physical Chemistry B, 112(35), 11122, 2008 |
| 5 |
A critical analysis of methods of calculation of a potential in simulated polar liquids: Strong arguments in favor of "molecule-based" summation and of vacuum boundary conditions in Ewald summation
Vorobjev YN, Hermans J
Journal of Physical Chemistry B, 103(46), 10234, 1999 |
| 6 |
Computation of the structure-dependent pK(a) shifts in a polypentapeptide of the poly[f(v)(IPGVG),f(E)(IPGEG)] family
Vila JA, Ripoll DR, Vorobjev YN, Scheraga HA
Journal of Physical Chemistry B, 102(17), 3065, 1998 |
| 7 |
Theoretical Modeling of Electrostatic Effects of Titratable Side-Chain Groups on Protein Conformation in a Polar Ionic Solution .2. PH-Induced Helix-Coil Transition of Poly(L-Lysine) in Water and Methanol Ionic-Solutions
Vorobjev YN, Scheraga HA, Honig B
Journal of Physical Chemistry, 99(18), 7180, 1995 |
| 8 |
Theoretical Modeling of Electrostatic Effects of Titratable Side-Chain Groups on Protein Conformation in a Polar Ionic Solution .1. Potential of Mean Force Between Charged Lysine Residues and Titration of Poly(L-Lysine) in 95-Percent Methanol Solution
Vorobjev YN, Scheraga HA, Hitz B, Honig B
Journal of Physical Chemistry, 98(42), 10940, 1994 |
