| 1 |
Mapping the Chemical Space of the RNA Cleavage and Its Implications for Ribozyme Catalysis
Mlynsky V, Kuhrova P, Jurecka P, Sponer J, Otyepka M, Banas P
Journal of Physical Chemistry B, 121(48), 10828, 2017 |
| 2 |
Reactive Conformation of the Active Site in the Hairpin Ribozyme Achieved by Molecular Dynamics Simulations with epsilon/zeta Force Field Reparametrizations
Mlynsky V, Kuhrova P, Zgarbova M, Jurecka P, Walter NG, Otyepka M, Sponer J, Banas P
Journal of Physical Chemistry B, 119(11), 4220, 2015 |
| 3 |
QM/MM Studies of Hairpin Ribozyme Self-Cleavage Suggest the Feasibility of Multiple Competing Reaction Mechanisms
Mlynsky V, Banas P, Walter NG, Sponer J, Otyepka M
Journal of Physical Chemistry B, 115(47), 13911, 2011 |
| 4 |
Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H(+) Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme
Mlynsky V, Banas P, Hollas D, Reblova K, Walter NG, Sponer J, Otyepka M
Journal of Physical Chemistry B, 114(19), 6642, 2010 |
