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No. Article
1 A wealth of discovery built on the Human Genome Project - by the numbers
Gates AJ, Gysi DM, Kellis M, Barabasi AL
Nature, 590(7845), 212, 2021
2 Regulatory genomic circuitry of human disease loci by integrative epigenomics
Boix CA, James BT, Park YP, Meuleman W, Kellis M
Nature, 590(7845), 2021
3 Expanded encyclopaedias of DNA elements in the human and mouse genomes
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, He YP, Mackiewicz M, Pauli-Behn F, Williams BA, Mortazavi A, Keller CA, Zhang XO, Elhajjajy SI, Huey J, Dickel DE, Snetkova V, Wei XT, Wang XF, Rivera-Mulia JC, Rozowsky J, Zhang J, Chhetri SB, Zhang JL, Victorsen A, White KP, Visel A, Yeo GEW, Burge CB, Lecuyer E, Gilbert DM, Dekker J, Rinn J, Mendenhall EM, Ecker JR, Kellis M, Klein RJ, Noble WS, Kundaje A, Guigo R, Farnham PJ, Cherry JM, Myers RM, Ren B, Graveley BR, Gerstein MB, Pennacchio LA, Snyder MP, Bernstein BE, Wold B, Hardison RC, Gingeras TR, Stamatoyannopoulos JA, Weng ZP
Nature, 583(7818), 699, 2020
4 Expanded encyclopaedias of DNA elements in the human and mouse genomes
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, He YP, Mackiewicz M, Pauli-Behn F, Williams BA, Mortazavi A, Keller CA, Zhang XO, Elhajjajy SI, Huey J, Dickel DE, Snetkova V, Wei XT, Wang XF, Rivera-Mulia JC, Rozowsky J, Zhang J, Chhetri SB, Zhang JL, Victorsen A, White KP, Visel A, Yeo GEW, Burge CB, Lecuyer E, Gilbert DM, Dekker J, Rinn J, Mendenhall EM, Ecker JR, Kellis M, Klein RJ, Noble WS, Kundaje A, Guigo R, Farnham PJ, Cherry JM, Myers RM, Ren B, Graveley BR, Gerstein MB, Pennacchio LA, Snyder MP, Bernstein BE, Wold B, Hardison RC, Gingeras TR, Stamatoyannopoulos JA, Weng ZP
Nature, 583(7818), 699, 2020
5 The GTEx Consortium atlas of genetic regulatory effects across human tissues
Aguet F, Barbeira AN, Bonazzola R, Brown A, Castel SE, Jo B, Kasela S, Kim-Hellmuth S, Liang YY, Parsana P, Flynn E, Fresard L, Gamazon ER, Hamel AR, He Y, Hormozdiari F, Mohammadi P, Munoz-Aguirre M, Ardlie KG, Battle A, Bonazzola R, Brown CD, Cox N, Dermitzakis ET, Engelhardt BE, Garrido-Martin D, Gay NR, Getz G, Guigo R, Hamel AR, Handsaker RE, He Y, Hoffman PJ, Hormozdiari F, Im HK, Jo B, Kasela S, Kashin S, Kim-Hellmuth S, Kwong A, Lappalainen T, Li X, Liang YY, MacArthur DG, Mohammadi P, Montgomery SB, Munoz-Aguirre M, Rouhana JM, Hormozdiari F, Im HK, Kim-Hellmuth S, Ardlie KG, Getz G, Guigo R, Im HK, Lappalainen T, Montgomery SB, Im HK, Lappalainen T, Lappalainen T, Anand S, Gabriel S, Getz G, Graubert A, Hadley K, Handsaker RE, Huang KH, Kashin S, Li X, MacArthur DG, Meier SR, Nedzel JL, Balliu B, Conrad D, Cotter DJ, Das S, de Goede OM, Eskin E, Eulalio TY, Ferraro NM, Garrido-Martin D, Gay NR, Getz G, Graubert A, Guigo R, Hadley K, Hamel AR, Handsaker RE, He Y, Hoffman PJ, Hormozdiari F, Hou L, Huang KH, Im HK, Jo B, Kasela S, Kashin S, Kellis M, Kim-Hellmuth S, Kwong A, Lappalainen T, Li X, Li X, Liang YY, MacArthur DG, Mangul S, Meier SR, Mohammadi P, Montgomery SB, Munoz-Aguirre M, Nachun DC, Nedzel JL, Nguyen DY, Nobel AB, Park Y, Reverter F, Sabatti C, Saha A, Segre AV, Stephens M, Strober BJ, Teran NA, Todres E, Vinuela A, Wang G, Wen XQ, Wright F, Wucher V, Zou YX, Ferreira PG, Li G, Mele M, Yeger-Lotem E, Barcus ME, Bradbury D, Krubit T, McLean JA, Qi LQ, Robinson K, Roche NV, Smith AM, Tabor DE, Undale A, Bridge J, Brigham LE, Foster BA, Gillard BM, Hasz R, Hunter M, Johns C, Johnson M, Karasik E, Kopen G, Leinweber WF, McDonald A, Moser MT, Myer K, Ramsey KD, Roe B, Shad S, Thomas JA, Walters G, Washington M, Wheeler J, Jewell SD, Rohrer DC, Valley DR, Davis DA, Mash DC, Branton PA, Sobin L, Barker LK, Gardiner HM, Mosavel M, Siminoff LA, Flicek P, Haeussler M, Juettemann T, Kent WJ, Lee CM, Powell CC, Rosenbloom KR, Ruffier M, Sheppard D, Taylor K, Trevanion SJ, Zerbino DR, Abell NS, Akey J, Chen L, Demanelis K, Doherty JA, Feinberg AP, Hansen KD, Hickey PF, Hou L, Jasmine F, Jiang LH, Kaul R, Kellis M, Kibriya MG, Li JB, Li Q, Lin S, Linder SE, Montgomery SB, Oliva M, Park Y, Pierce BL, Rizzardi LF, Skol AD, Smith KS, Snyder M, Stamatoyannopoulos J, Tang H, Wang M, Carithers LJ, Guan P, Koester SE, Little AR, Moore HM, Nierras CR, Rao AK, Vaught JB, Volpi S
Science, 369(6509), 1318, 2020
6 Single-cell transcriptomic analysis of Alzheimer's disease (vol 570, pg 332, 2019)
Mathys H, Davila-Velderrain J, Peng ZY, Gao F, Mohammadi S, Young JZ, Menon M, He L, Abdurrob F, Jiang XQ, Martorell AJ, Ransohoff RM, Hafler BP, Bennett DA, Kellis M, Tsai LH
Nature, 571(7763), E1, 2019
7 Single-cell transcriptomic analysis of Alzheimer's disease
Mathys H, Davila-Velderrain J, Peng ZY, Gao F, Mohammadi S, Young JZ, Menon M, He L, Abdurrob F, Jiang XQ, Martorell AJ, Ransohoff RM, Hafler BP, Bennett DA, Kellis M, Tsai LH
Nature, 570(7761), 332, 2019
8 Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci
Onuchic V, Lurie E, Carrero I, Pawliczek P, Patel RY, Rozowsky J, Galeev T, Huang ZY, Altshuler RC, Zhang ZZ, Harris RA, Coarfa C, Ashmore L, Bertol JW, Fakhouri WD, Yu F, Kellis M, Gerstein M, Milosavljevic A
Science, 361(6409), 1354, 2018
9 Genetic effects on gene expression across human tissues
Aguet F, Brown AA, Castel SE, Davis JR, He Y, Jo B, Mohammadi P, Park Y, Parsana P, Segre AV, Strober BJ, Zappala Z, Cummings BB, Gelfand ET, Hadley K, Huang KH, Lek M, Li X, Nedzel JL, Nguyen DY, Noble MS, Sullivan TJ, Tukiainen T, MacArthur DG, Getz G, Management NP, Addington A, Guan P, Koester S, Little AR, Lockhart NC, Moore HM, Rao A, Struewing JP, Volpi S, Collection B, Brigham LE, Hasz R, Hunter M, Johns C, Johnson M, Kopen G, Leinweber WF, Lonsdale JT, McDonald A, Mestichelli B, Myer K, Roe B, Salvatore M, Shad S, Thomas JA, Walters G, Washington M, Wheeler J, Bridge J, Foster BA, Gillard BM, Karasik E, Kumar R, Miklos M, Moser MT, Jewell SD, Montroy RG, Rohrer DC, Valley D, Mash DC, Davis DA, Sobin L, Barcus ME, Branton PA, Grp EMW, Abell NS, Balliu B, Delaneau O, Fresard L, Gamazon ER, Garrido-Martin D, Gewirtz ADH, Gliner G, Gloudemans MJ, Han B, He AZ, Hormozdiari F, Li X, Liu B, Kang EY, McDowell IC, Ongen H, Palowitch JJ, Peterson CB, Quon G, Ripke S, Saha A, Shabalin AA, Shimko TC, Sul JH, Teran NA, Tsang EK, Zhang H, Zhou YH, Bustamante CD, Cox NJ, Guigo R, Kellis M, McCarthy MI, Conrad DF, Eskin E, Li G, Nobel AB, Sabatti C, Stranger BE, Wen X, Wright FA, Ardlie KG, Dermitzakis ET, Lappalainen T, Battle A, Brown CD, Engelhardt BE, Montgomery SB, Aguet F, Ardlie KG, Cummings BB, Gelfand ET, Getz G, Hadley K, Handsaker RE, Huang KH, Kashin S, Karczewski KJ, Lek M, Li X, MacArthur DG, Nedzel JL, Nguyen DT, Noble MS, Segre AV, Trowbridge CA, Tukiainen T, Abell NS, Balliu B, Barshir R, Basha O, Battle A, Bogu GK, Brown A, Brown CD, Castel SE, Chen LS, Chiang C, Conrad DF, Cox NJ, Damani FN, Davis JR, Delaneau O, Dermitzakis ET, Engelhardt BE, Eskin E, Ferreira PG, Fresard L, Gamazon ER, Garrido-Martin D, Gewirtz ADH, Gliner G, Gloudemans MJ, Guigo R, Hall IM, Han B, He Y, Hormozdiari F, Howald C, Im HK, Jo B, Kang EY, Kim Y, Kim-Hellmuth S, Lappalainen T, Li G, Li X, Liu B, Mangul S, McCarthy MI, McDowell IC, Mohammadi P, Monlong J, Montgomery SB, Munoz-Aguirre M, Ndungu AW, Nicolae DL, Nobel AB, Oliva M, Ongen H, Palowitch JJ, Panousis N, Papasaikas P, Park Y, Parsana P, Payne AJ, Peterson CB, Quan J, Reverter F, Sabatti C, Saha A, Sammeth M, Scott AJ, Shabalin AA, Sodaei R, Stephens M, Stranger BE, Strober BJ, Sul JH, Tsang EK, Urbut S, De Bunt MV, Wang G, Wen X, Wright FA, Xi HS, Yeger-Lotem E, Zappala Z, Zaugg JB, Zhou YH, Akey JM, Bates D, Chan J, Chen LS, Claussnitzer M, Demanelis K, Diegel M, Doherty JA, Feinberg AP, Fernando MS, Halow J, Hansen KD, Haugen E, Hickey PF, Hou L, Jasmine F, Jian R, Jiang L, Johnson A, Kaul R, Kellis M, Kibriya MG, Lee K, Li JB, Li Q, Li X, Lin J, Lin S, Linder S, Linke C, Liu Y, Maurano MT, Molinie B, Montgomery SB, Nelson J, Neri FJ, Oliva M, Park Y, Pierce BL, Rinaldi NJ, Rizzardi LF, Sandstrom R, Skol A, Smith KS, Snyder MP, Stamatoyannopoulos J, Stranger BE, Tang H, Tsang EK, Wang L, Wang M, Van Wittenberghe N, Wu F, Zhang R, Fund NC, Nierras CR, Nci N, Branton PA, Carithers LJ, Guan P, Moore HM, Rao A, Vaught JB, Nhgri N, Gould SE, Lockart NC, Martin C, Struewing JP, Volpi S, Nimh N, Addington AM, Koester SE, Nida N, Little AR, Brigham LE, Hasz R, Hunter M, Johns C, Johnson M, Kopen G, Leinweber WF, Lonsdale JT, McDonald A, Mestichelli B, Myer K, Roe B, Salvatore M, Shad S, Thomas JA, Walters G, Washington M, Wheeler J, Bridge J, Foster BA, Gillard BM, Karasik E, Kumar R, Miklos M, Moser MT, Jewell SD, Montroy RG, Rohrer DC, Valley DR, Davis DA, Mash DC, Undale AH, Smith AM, Tabor DE, Roche NV, McLean JA, Vatanian N, Robinson KL, Sobin L, Barcus ME, Valentino KM, Qi L, Hunter S, Hariharan P, Singh S, Um KS, Matose T, Tomaszewski MM, Study E, Barker LK, Mosavel M, Siminoff LA, Traino HM, Flicek P, Juettemann T, Ruffier M, Sheppard D, Taylor K, Trevanion SJ, Zerbino DR, Craft B, Goldman M, Haeussler M, Kent WJ, Lee CM, Paten B, Rosenbloom KR, Vivian J, Zhu J
Nature, 550(7675), 204, 2017
10 Survey of variation in human transcription factors reveals prevalent DNA binding changes
Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordan R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML
Science, 351(6280), 1450, 2016