| 1 |
Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein
Lakhani B, Thayer KM, Hingorani MM, Beveridge DL
Journal of Physical Chemistry B, 121(9), 2049, 2017 |
| 2 |
Molecular Dynamics-Markov State Model of Protein Ligand Binding and Allostery in CRIB-PDZ: Conformational Selection and Induced Fit
Thayer KM, Lakhani B, Beveridge DL
Journal of Physical Chemistry B, 121(22), 5509, 2017 |
| 3 |
Dynamics of Water and Ions Near DNA: Comparison of Simulation to Time-Resolved Stokes-Shift Experiments
Sen S, Andreatta D, Ponomarev SY, Beveridge DL, Berg MA
Journal of the American Chemical Society, 131(5), 1724, 2009 |
| 4 |
Characterization of the dynamics of an essential helix in the U1A protein by time-resolved fluorescence measurements
Anunciado D, Agumeh M, Kormos BL, Beveridge DL, Knee JL, Baranger AM
Journal of Physical Chemistry B, 112(19), 6122, 2008 |
| 5 |
A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations
Kormos BL, Baranger AM, Beveridge DL
Journal of Structural Biology, 157(3), 500, 2007 |
| 6 |
Do collective atomic fluctuations account for cooperative effects? Molecular dynamics studies of the U1A-RNA complex
Kormos BL, Baranger AM, Beveridge DL
Journal of the American Chemical Society, 128(28), 8992, 2006 |
| 7 |
Molecular dynamics and thermodynamics of protein-RNA interactions: Mutation of a conserved aromatic residue modifies stacking interactions and structural adaptation in the U1A-stem loop 2 RNA complex
Blakaj DM, McConnell KJ, Beveridge DL, Baranger AM
Journal of the American Chemical Society, 123(11), 2548, 2001 |
| 8 |
A modification of the generalized Born theory for improved estimates of solvation energies and pK shifts
Jayaram B, Liu Y, Beveridge DL
Journal of Chemical Physics, 109(4), 1465, 1998 |
| 9 |
Molecular dynamics studies of the conformational preferences of a DNA double helix in water and an ethanol/water mixture : Theoretical considerations of the A double left right arrow B transition
Sprous D, Young MA, Beveridge DL
Journal of Physical Chemistry B, 102(23), 4658, 1998 |
| 10 |
Local dielectric environment of B-DNA in solution : Results from a 14 ns molecular dynamics trajectory
Young MA, Jayaram B, Beveridge DL
Journal of Physical Chemistry B, 102(39), 7666, 1998 |
